
5
B. Quantifying sensing efficacy with signal-to-noise ratio
If a particular local curvature or density deviation is sampled
from the distributions in Fig. 4, can the bead size correspond-
ing to the sampled measurement be reliably determined? This
can be challenging due to overlapping distributions, since each
bead size is associated to a multiplicity of instantaneous 𝐶𝑎
and 𝜌𝑎values. We summarize the way that thermal fluctua-
tions of the membrane could confound even a perfect detector
of curvature or lipid density in distinguishing between two
membrane-adhered beads of different sizes with a signal-to-
noise ratio (SNR), such that
SNR =(𝜇𝐴−𝜇𝐵)2
𝜎2
𝐴+𝜎2
𝐵
,(10)
where 𝜇𝐴and 𝜇𝐵are the average membrane curvature or lipid
density deviation at steady-state for two beads 𝐴and 𝐵, and
𝜎2
𝐴and 𝜎2
𝐵are the corresponding variances of the membrane
curvature or density deviation sensed by the protein. The mo-
tivation for this definition is to measure the distance between
the means of two histograms in Fig. 4in terms of their vari-
ance. If we define a variable 𝑋which is the difference between
the measured variable on bead 𝐴and the measured variable
on bead 𝐵, the SNR is h𝑋i2/h𝑋2i−h𝑋i2—which gives Eq.
(10) because the variance of two independent variables adds.
The greater this SNR value is, the better a protein can dis-
tinguish between the two beads 𝐴and 𝐵in the presence of
thermal fluctuations of the membrane. We will show in Sec-
tion III E that—with some additional assumptions—this SNR
controls the largest possible ratio of association rates of pro-
teins to beads of radius 𝑅𝐴and 𝑅𝐵, and use this to estimate
experimental SNR.
We use our FSBD simulation to compute the SNR for pairs
of beads in Fig. 5, keeping the difference 𝑅𝐴−𝑅𝐵to be
200 nm. The smaller the beads, the better a protein can dis-
tinguish between two similarly sized beads, as indicated by
the magnitude of the SNR. For beads on the micron-scale,
the SNR is much smaller than 1when the beads are similarly
sized (such as 1.2 𝜇m and 1.4 𝜇m diameters). This is true
for both the SNR of curvature sensing, SNR𝐶, and the SNR
of density sensing, SNR𝜌. The decrease in SNR is largely
driven by the decreasing signal: large beads have curvatures
1/𝑅that are both increasingly close to zero curvature, so the
term (𝜇𝐴−𝜇𝐵)2will shrink. As we will see later (Fig. 8), for
beads where the radii differ significantly, e.g. 1micron vs. 3
micron diameters, the SNR can be appreciable. We also see
that changing the membrane-substrate adhesion energy from
a weakly-adherent membrane value (𝛾=1011 J/m4) to one
appropriate to a SLB (𝛾=1013 J/m4) increases the SNR.
To gain an understanding of how the SNR depends on the
protein size, the mechanical properties of the membrane, the
geometry of the bead, and the membrane-bead adhesion, we
develop a theoretical model for the SNR in the next section,
Sec. III C. We plot this theoretical result against the sim-
ulation result and see good agreement, especially at strong
membrane-substrate adhesion and large bead sizes (Fig. 5).
This deviation at small bead sizes (∼200 −300 nm radii) and
weak adhesion (𝛾∼1011 J/m4) is expected. As we discuss in
the next section, our theoretical model assumes that on aver-
age, the fluctuating membrane perfectly follows the shape of
a spherical bead of any radius 𝑅. However, in the simulated
membrane-bead systems using hemispherical beads with small
𝑅, weak membrane adhesion cannot overcome the substantial
bending forces required at the sharp intersection between the
periphery of a small hemisphere and the horizontal plane from
which it is projected [49]. A stronger adhesion strength such
as 𝛾∼1013 J/m4rectifies this, and allows the membrane to
follow the shape of the bead nearly perfectly. In Appendix
E, we show a comparison of the cross-sectional profiles of a
simulated membrane adhered to a small bead for both weak
and strong adhesion.
C. Analytical calculation of the SNR
To find an analytical form for the SNR written in Eq. (10),
we need the average values of curvature and density deviation
on a bead as well as their standard deviations. The average
mean curvature and density deviation are reflected by the av-
erage shape of the membrane wrapping the bead, and we can
find analytical values for them.
If the membrane is strongly adherent to the bead, on average
its shape will just be the bead’s shape, hℎ(r)i =ℎbead (r). The
averaged mean curvature for a membrane adhered to a bead
is then −1
2∇2ℎbead (r). At the top of the bead (r=rprot), the
curvature is then
h𝐶𝑎i ≈ 1/𝑅, (11)
where 𝑅is the bead’s radius. Our assumption that the mem-
brane follows the shape of the bead can be checked with sim-
ulation: we see that it is reasonable at sufficiently large bead
sizes and strong membrane-substrate adhesion (refer to Fig.
13 in Appendix).
Given that the membrane is deformed to follow the bead, we
can find the value of 𝜌(r)that would minimize the energy of
the membrane, solving for 𝜌qsuch that 𝜕𝐸/𝜕 𝜌∗
q=0(using Eq.
(4)). This would be the steady-state 𝜌qholding the membrane
shape fixed. We find that this value is
𝜌ss
q=𝑑𝑞2ℎq.(12)
Inverting the Fourier transform, we see that the density at the
protein’s location is
𝜌ss (rprot)=−𝑑∇2ℎ(rprot)=2𝑑
𝑅.(13)
To approximate the standard deviation of observed curvature
and density histograms, we start by noting that in Fig. 4,
the width of the histograms is broadly consistent across many
different bead diameters. This suggests that 𝜎𝐴and 𝜎𝐵do not
strongly depend on bead size. In fact, for a large enough bead,
the variances of the observed curvature are essentially those
for a membrane adherent on a flat substrate with the same
adhesion strength. This approximation is warranted for the
same reason that sensing micron-scale curvature is difficult: